Paper/patches/server/0362-Improved-Watchdog-Support.patch

From 0000000000000000000000000000000000000000 Mon Sep 17 00:00:00 2001
From: Aikar <aikar@aikar.co>
Date: Sun, 12 Apr 2020 15:50:48 -0400
Subject: [PATCH] Improved Watchdog Support

Forced Watchdog Crash support and Improve Async Shutdown

If the request to shut down the server is received while we are in
a watchdog hang, immediately treat it as a crash and begin the shutdown
process. Shutdown process is now improved to also shutdown cleanly when
not using restart scripts either.

If a server is deadlocked, a server owner can send SIGUP (or any other signal
the JVM understands to shut down as it currently does) and the watchdog
will no longer need to wait until the full timeout, allowing you to trigger
a close process and try to shut the server down gracefully, saving player and
world data.

Previously there was no way to trigger this outside of waiting for a full watchdog
timeout, which may be set to a really long time...

Additionally, fix everything to do with shutting the server down asynchronously.

Previously, nearly everything about the process was fragile and unsafe. Main might
not have actually been frozen, and might still be manipulating state.

Or, some reuest might ask main to do something in the shutdown but main is dead.

Or worse, other things might start closing down items such as the Console or Thread Pool
before we are fully shutdown.

This change tries to resolve all of these issues by moving everything into the stop
method and guaranteeing only one thread is stopping the server.

We then issue Thread Death to the main thread of another thread initiates the stop process.
We have to ensure Thread Death propagates correctly though to stop main completely.

This is to ensure that if main isn't truely stuck, it's not manipulating state we are trying to save.

This also moves all plugins who register "delayed init" tasks to occur just before "Done" so they
are properly accounted for and wont trip watchdog on init.

diff --git a/src/main/java/com/destroystokyo/paper/Metrics.java b/src/main/java/com/destroystokyo/paper/Metrics.java
index 6aaed8e8bf8c721fc834da5c76ac72a4c3e92458..4b002e8b75d117b726b0de274a76d3596fce015b 100644
--- a/src/main/java/com/destroystokyo/paper/Metrics.java
+++ b/src/main/java/com/destroystokyo/paper/Metrics.java
@@ -92,7 +92,12 @@ public class Metrics {
      * Starts the Scheduler which submits our data every 30 minutes.
      */
     private void startSubmitting() {
-        final Runnable submitTask = this::submitData;
+        final Runnable submitTask = () -> {
+            if (MinecraftServer.getServer().hasStopped()) {
+                return;
+            }
+            submitData();
+        };
 
         // Many servers tend to restart at a fixed time at xx:00 which causes an uneven distribution of requests on the
         // bStats backend. To circumvent this problem, we introduce some randomness into the initial and second delay.
diff --git a/src/main/java/net/minecraft/CrashReport.java b/src/main/java/net/minecraft/CrashReport.java
index a9a0248b1bd1ac454064e977b61f9b7d80962ff8..059b1a0bf048af6a28c322f35da3d3cbbe426546 100644
--- a/src/main/java/net/minecraft/CrashReport.java
+++ b/src/main/java/net/minecraft/CrashReport.java
@@ -233,6 +233,7 @@ public class CrashReport {
     }
 
     public static CrashReport forThrowable(Throwable cause, String title) {
+        if (cause instanceof ThreadDeath) com.destroystokyo.paper.util.SneakyThrow.sneaky(cause); // Paper
         while (cause instanceof CompletionException && cause.getCause() != null) {
             cause = cause.getCause();
         }
diff --git a/src/main/java/net/minecraft/server/MinecraftServer.java b/src/main/java/net/minecraft/server/MinecraftServer.java
index ce113cc2bc52c1135799190a22e0be21744b58cc..9a25d351df1141e9218d37c0f90e2d67f9c8c3ef 100644
--- a/src/main/java/net/minecraft/server/MinecraftServer.java
+++ b/src/main/java/net/minecraft/server/MinecraftServer.java
@@ -297,7 +297,7 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
     public java.util.Queue<Runnable> processQueue = new java.util.concurrent.ConcurrentLinkedQueue<Runnable>();
     public int autosavePeriod;
     public Commands vanillaCommandDispatcher;
-    private boolean forceTicks;
+    public boolean forceTicks; // Paper
     // CraftBukkit end
     // Spigot start
     public static final int TPS = 20;
@@ -308,6 +308,9 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
     public final io.papermc.paper.configuration.PaperConfigurations paperConfigurations; // Paper - add paper configuration files
     public static long currentTickLong = 0L; // Paper - track current tick as a long
 
+    public volatile Thread shutdownThread; // Paper
+    public volatile boolean abnormalExit = false; // Paper
+
     public static <S extends MinecraftServer> S spin(Function<Thread, S> serverFactory) {
         AtomicReference<S> atomicreference = new AtomicReference();
         Thread thread = new io.papermc.paper.util.TickThread(() -> { // Paper - rewrite chunk system
@@ -914,6 +917,7 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
 
     // CraftBukkit start
     private boolean hasStopped = false;
+    public volatile boolean hasFullyShutdown = false; // Paper
     private final Object stopLock = new Object();
     public final boolean hasStopped() {
         synchronized (this.stopLock) {
@@ -928,6 +932,19 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
             if (this.hasStopped) return;
             this.hasStopped = true;
         }
+        // Paper start - kill main thread, and kill it hard
+        shutdownThread = Thread.currentThread();
+        org.spigotmc.WatchdogThread.doStop(); // Paper
+        if (!isSameThread()) {
+            MinecraftServer.LOGGER.info("Stopping main thread (Ignore any thread death message you see! - DO NOT REPORT THREAD DEATH TO PAPER)");
+            while (this.getRunningThread().isAlive()) {
+                this.getRunningThread().stop();
+                try {
+                    Thread.sleep(1);
+                } catch (InterruptedException e) {}
+            }
+        }
+        // Paper end
         // CraftBukkit end
         if (this.metricsRecorder.isRecording()) {
             this.cancelRecordingMetrics();
@@ -981,7 +998,20 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
             this.getProfileCache().save(false); // Paper
         }
         // Spigot end
+        // Paper start - move final shutdown items here
+        LOGGER.info("Flushing Chunk IO");
+        // Paper end - move final shutdown items here
         io.papermc.paper.chunk.system.io.RegionFileIOThread.close(true); // Paper // Paper - rewrite chunk system
+        // Paper start - move final shutdown items here
+        LOGGER.info("Closing Thread Pool");
+        Util.shutdownExecutors(); // Paper
+        LOGGER.info("Closing Server");
+        try {
+            net.minecrell.terminalconsole.TerminalConsoleAppender.close(); // Paper - Use TerminalConsoleAppender
+        } catch (Exception e) {
+        }
+        this.onServerExit();
+        // Paper end - move final shutdown items here
     }
 
     public String getLocalIp() {
@@ -1076,6 +1106,7 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
 
     protected void runServer() {
         try {
+            long serverStartTime = Util.getNanos(); // Paper
             if (!this.initServer()) {
                 throw new IllegalStateException("Failed to initialize server");
             }
@@ -1085,6 +1116,18 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
             this.status = this.buildServerStatus();
 
             // Spigot start
+            // Paper start - move done tracking
+            LOGGER.info("Running delayed init tasks");
+            this.server.getScheduler().mainThreadHeartbeat(this.tickCount); // run all 1 tick delay tasks during init,
+            // this is going to be the first thing the tick process does anyways, so move done and run it after
+            // everything is init before watchdog tick.
+            // anything at 3+ won't be caught here but also will trip watchdog....
+            // tasks are default scheduled at -1 + delay, and first tick will tick at 1
+            String doneTime = String.format(java.util.Locale.ROOT, "%.3fs", (double) (Util.getNanos() - serverStartTime) / 1.0E9D);
+            LOGGER.info("Done ({})! For help, type \"help\"", doneTime);
+            // Paper end
+
+            org.spigotmc.WatchdogThread.tick(); // Paper
             org.spigotmc.WatchdogThread.hasStarted = true; // Paper
             Arrays.fill( this.recentTps, 20 );
             long tickSection = Util.getNanos(), curTime, tickCount = 1; // Paper
@@ -1163,6 +1206,12 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
                 JvmProfiler.INSTANCE.onServerTick(this.smoothedTickTimeMillis);
             }
         } catch (Throwable throwable) {
+            // Paper start
+            if (throwable instanceof ThreadDeath) {
+                MinecraftServer.LOGGER.error("Main thread terminated by WatchDog due to hard crash", throwable);
+                return;
+            }
+            // Paper end
             MinecraftServer.LOGGER.error("Encountered an unexpected exception", throwable);
             CrashReport crashreport = MinecraftServer.constructOrExtractCrashReport(throwable);
 
@@ -1187,14 +1236,14 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
                     this.services.profileCache().clearExecutor();
                 }
 
-                org.spigotmc.WatchdogThread.doStop(); // Spigot
+                //org.spigotmc.WatchdogThread.doStop(); // Spigot // Paper - move into stop
                 // CraftBukkit start - Restore terminal to original settings
                 try {
-                    net.minecrell.terminalconsole.TerminalConsoleAppender.close(); // Paper - Use TerminalConsoleAppender
+                    //net.minecrell.terminalconsole.TerminalConsoleAppender.close(); // Paper - Move into stop
                 } catch (Exception ignored) {
                 }
                 // CraftBukkit end
-                this.onServerExit();
+                //this.onServerExit(); // Paper - moved into stop
             }
 
         }
@@ -1263,6 +1312,12 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
 
     @Override
     public TickTask wrapRunnable(Runnable runnable) {
+        // Paper start - anything that does try to post to main during watchdog crash, run on watchdog
+        if (this.hasStopped && Thread.currentThread().equals(shutdownThread)) {
+            runnable.run();
+            runnable = () -> {};
+        }
+        // Paper end
         return new TickTask(this.tickCount, runnable);
     }
 
@@ -2047,7 +2102,15 @@ public abstract class MinecraftServer extends ReentrantBlockableEventLoop<TickTa
 
             this.worldData.setDataConfiguration(worlddataconfiguration);
             this.resources.managers.updateRegistryTags(this.registryAccess());
-            this.getPlayerList().saveAll();
+            // Paper start
+            if (Thread.currentThread() != this.serverThread) {
+                return;
+            }
+            // this.getPlayerList().saveAll(); // Paper - we don't need to save everything, just advancements
+            for (ServerPlayer player : this.getPlayerList().getPlayers()) {
+                player.getAdvancements().save();
+            }
+            // Paper end
             this.getPlayerList().reloadResources();
             this.functionManager.replaceLibrary(this.resources.managers.getFunctionLibrary());
             this.structureTemplateManager.onResourceManagerReload(this.resources.resourceManager);
diff --git a/src/main/java/net/minecraft/server/dedicated/DedicatedServer.java b/src/main/java/net/minecraft/server/dedicated/DedicatedServer.java
index 5f4f993243f19f1e88b7f2bc5e40a6b2125fd819..c9cca6ba3500791485bf19155156c38c24f1c761 100644
--- a/src/main/java/net/minecraft/server/dedicated/DedicatedServer.java
+++ b/src/main/java/net/minecraft/server/dedicated/DedicatedServer.java
@@ -269,7 +269,7 @@ public class DedicatedServer extends MinecraftServer implements ServerInterface
             long j = Util.getNanos() - i;
             String s = String.format(Locale.ROOT, "%.3fs", (double) j / 1.0E9D);
 
-            DedicatedServer.LOGGER.info("Done ({})! For help, type \"help\"", s);
+            //DedicatedServer.LOGGER.info("Done ({})! For help, type \"help\"", s); // Paper moved to after init
             if (dedicatedserverproperties.announcePlayerAchievements != null) {
                 ((GameRules.BooleanValue) this.getGameRules().getRule(GameRules.RULE_ANNOUNCE_ADVANCEMENTS)).set(dedicatedserverproperties.announcePlayerAchievements, this);
             }
@@ -397,7 +397,8 @@ public class DedicatedServer extends MinecraftServer implements ServerInterface
             // this.remoteStatusListener.stop(); // Paper - don't wait for remote connections
         }
 
-        System.exit(0); // CraftBukkit
+        hasFullyShutdown = true; // Paper
+        System.exit(this.abnormalExit ? 70 : 0); // CraftBukkit // Paper
     }
 
     @Override
@@ -778,7 +779,7 @@ public class DedicatedServer extends MinecraftServer implements ServerInterface
     @Override
     public void stopServer() {
         super.stopServer();
-        Util.shutdownExecutors();
+        //Util.shutdownExecutors(); // Paper - moved into super
         SkullBlockEntity.clear();
     }
 
diff --git a/src/main/java/net/minecraft/server/players/PlayerList.java b/src/main/java/net/minecraft/server/players/PlayerList.java
index 03f8e1775e05293665f995b6c3ee52ed11447e79..8c9dcd895f73765327ac00d7cc706b6ae8b9d81f 100644
--- a/src/main/java/net/minecraft/server/players/PlayerList.java
+++ b/src/main/java/net/minecraft/server/players/PlayerList.java
@@ -532,7 +532,7 @@ public abstract class PlayerList {
         this.cserver.getPluginManager().callEvent(playerQuitEvent);
         entityplayer.getBukkitEntity().disconnect(playerQuitEvent.getQuitMessage());
 
-        entityplayer.doTick(); // SPIGOT-924
+        if (server.isSameThread()) entityplayer.doTick(); // SPIGOT-924 // Paper - don't tick during emergency shutdowns (Watchdog)
         // CraftBukkit end
 
         // Paper start - Remove from collideRule team if needed
diff --git a/src/main/java/net/minecraft/util/thread/BlockableEventLoop.java b/src/main/java/net/minecraft/util/thread/BlockableEventLoop.java
index f5829ae484d93b547a5437b85a9621346384a11b..83701fbfaa56a232593ee8f11a3afb8941238bfa 100644
--- a/src/main/java/net/minecraft/util/thread/BlockableEventLoop.java
+++ b/src/main/java/net/minecraft/util/thread/BlockableEventLoop.java
@@ -152,6 +152,7 @@ public abstract class BlockableEventLoop<R extends Runnable> implements Profiler
         try {
             task.run();
         } catch (Exception var3) {
+            if (var3.getCause() instanceof ThreadDeath) throw var3; // Paper
             LOGGER.error(LogUtils.FATAL_MARKER, "Error executing task on {}", this.name(), var3);
         }
 
diff --git a/src/main/java/net/minecraft/world/level/Level.java b/src/main/java/net/minecraft/world/level/Level.java
index 8782c443d6288cb1cadc181e7f2923cbcd3061d2..1bb5867bb2e99be1696c89ec47cd3aa0d655fdfb 100644
--- a/src/main/java/net/minecraft/world/level/Level.java
+++ b/src/main/java/net/minecraft/world/level/Level.java
@@ -913,6 +913,7 @@ public abstract class Level implements LevelAccessor, AutoCloseable {
         try {
             tickConsumer.accept(entity);
         } catch (Throwable throwable) {
+            if (throwable instanceof ThreadDeath) throw throwable; // Paper
             // Paper start - Prevent tile entity and entity crashes
             final String msg = String.format("Entity threw exception at %s:%s,%s,%s", entity.level().getWorld().getName(), entity.getX(), entity.getY(), entity.getZ());
             MinecraftServer.LOGGER.error(msg, throwable);
diff --git a/src/main/java/net/minecraft/world/level/chunk/LevelChunk.java b/src/main/java/net/minecraft/world/level/chunk/LevelChunk.java
index 3acef646275aa05100e13e149bc5ff6d1ccbbea8..45ecda3b67025881a145d40a5291c34e5a1f9590 100644
--- a/src/main/java/net/minecraft/world/level/chunk/LevelChunk.java
+++ b/src/main/java/net/minecraft/world/level/chunk/LevelChunk.java
@@ -1176,6 +1176,7 @@ public class LevelChunk extends ChunkAccess {
 
                         gameprofilerfiller.pop();
                     } catch (Throwable throwable) {
+                        if (throwable instanceof ThreadDeath) throw throwable; // Paper
                         // Paper start - Prevent tile entity and entity crashes
                         final String msg = String.format("BlockEntity threw exception at %s:%s,%s,%s", LevelChunk.this.getLevel().getWorld().getName(), this.getPos().getX(), this.getPos().getY(), this.getPos().getZ());
                         net.minecraft.server.MinecraftServer.LOGGER.error(msg, throwable);
diff --git a/src/main/java/org/bukkit/craftbukkit/Main.java b/src/main/java/org/bukkit/craftbukkit/Main.java
index fdce27bbd60897e7584db627b5f9ff32c930cd78..fa9c17c49a17b8325a7510316de89e3ff3b6f1cf 100644
--- a/src/main/java/org/bukkit/craftbukkit/Main.java
+++ b/src/main/java/org/bukkit/craftbukkit/Main.java
@@ -179,6 +179,36 @@ public class Main {
 
         OptionSet options = null;
 
+        // Paper start - preload logger classes to avoid plugins mixing versions
+        tryPreloadClass("org.apache.logging.log4j.core.Core");
+        tryPreloadClass("org.apache.logging.log4j.core.appender.AsyncAppender");
+        tryPreloadClass("org.apache.logging.log4j.core.Appender");
+        tryPreloadClass("org.apache.logging.log4j.core.ContextDataInjector");
+        tryPreloadClass("org.apache.logging.log4j.core.Filter");
+        tryPreloadClass("org.apache.logging.log4j.core.ErrorHandler");
+        tryPreloadClass("org.apache.logging.log4j.core.LogEvent");
+        tryPreloadClass("org.apache.logging.log4j.core.Logger");
+        tryPreloadClass("org.apache.logging.log4j.core.LoggerContext");
+        tryPreloadClass("org.apache.logging.log4j.core.LogEventListener");
+        tryPreloadClass("org.apache.logging.log4j.core.AbstractLogEvent");
+        tryPreloadClass("org.apache.logging.log4j.message.AsynchronouslyFormattable");
+        tryPreloadClass("org.apache.logging.log4j.message.FormattedMessage");
+        tryPreloadClass("org.apache.logging.log4j.message.ParameterizedMessage");
+        tryPreloadClass("org.apache.logging.log4j.message.Message");
+        tryPreloadClass("org.apache.logging.log4j.message.MessageFactory");
+        tryPreloadClass("org.apache.logging.log4j.message.TimestampMessage");
+        tryPreloadClass("org.apache.logging.log4j.message.SimpleMessage");
+        tryPreloadClass("org.apache.logging.log4j.core.async.AsyncLogger");
+        tryPreloadClass("org.apache.logging.log4j.core.async.AsyncLoggerContext");
+        tryPreloadClass("org.apache.logging.log4j.core.async.AsyncQueueFullPolicy");
+        tryPreloadClass("org.apache.logging.log4j.core.async.AsyncLoggerDisruptor");
+        tryPreloadClass("org.apache.logging.log4j.core.async.RingBufferLogEvent");
+        tryPreloadClass("org.apache.logging.log4j.core.async.DisruptorUtil");
+        tryPreloadClass("org.apache.logging.log4j.core.async.RingBufferLogEventHandler");
+        tryPreloadClass("org.apache.logging.log4j.core.impl.ThrowableProxy");
+        tryPreloadClass("org.apache.logging.log4j.core.impl.ExtendedClassInfo");
+        tryPreloadClass("org.apache.logging.log4j.core.impl.ExtendedStackTraceElement");
+        // Paper end
         try {
             options = parser.parse(args);
         } catch (joptsimple.OptionException ex) {
@@ -289,8 +319,64 @@ public class Main {
             } catch (Throwable t) {
                 t.printStackTrace();
             }
+            // Paper start
+            // load some required classes to avoid errors during shutdown if jar is replaced
+            // also to guarantee our version loads over plugins
+            tryPreloadClass("com.destroystokyo.paper.util.SneakyThrow");
+            tryPreloadClass("com.google.common.collect.Iterators$PeekingImpl");
+            tryPreloadClass("com.google.common.collect.MapMakerInternalMap$Values");
+            tryPreloadClass("com.google.common.collect.MapMakerInternalMap$ValueIterator");
+            tryPreloadClass("com.google.common.collect.MapMakerInternalMap$WriteThroughEntry");
+            tryPreloadClass("com.google.common.collect.Iterables");
+            for (int i = 1; i <= 15; i++) {
+                tryPreloadClass("com.google.common.collect.Iterables$" + i, false);
+            }
+            tryPreloadClass("org.apache.commons.lang3.mutable.MutableBoolean");
+            tryPreloadClass("org.apache.commons.lang3.mutable.MutableInt");
+            tryPreloadClass("org.jline.terminal.impl.MouseSupport");
+            tryPreloadClass("org.jline.terminal.impl.MouseSupport$1");
+            tryPreloadClass("org.jline.terminal.Terminal$MouseTracking");
+            tryPreloadClass("co.aikar.timings.TimingHistory");
+            tryPreloadClass("co.aikar.timings.TimingHistory$MinuteReport");
+            tryPreloadClass("io.netty.channel.AbstractChannelHandlerContext");
+            tryPreloadClass("io.netty.channel.AbstractChannelHandlerContext$11");
+            tryPreloadClass("io.netty.channel.AbstractChannelHandlerContext$12");
+            tryPreloadClass("io.netty.channel.AbstractChannel$AbstractUnsafe$8");
+            tryPreloadClass("io.netty.util.concurrent.DefaultPromise");
+            tryPreloadClass("io.netty.util.concurrent.DefaultPromise$1");
+            tryPreloadClass("io.netty.util.internal.PromiseNotificationUtil");
+            tryPreloadClass("io.netty.util.internal.SystemPropertyUtil");
+            tryPreloadClass("org.bukkit.craftbukkit.scheduler.CraftScheduler");
+            tryPreloadClass("org.bukkit.craftbukkit.scheduler.CraftScheduler$1");
+            tryPreloadClass("org.bukkit.craftbukkit.scheduler.CraftScheduler$2");
+            tryPreloadClass("org.bukkit.craftbukkit.scheduler.CraftScheduler$3");
+            tryPreloadClass("org.bukkit.craftbukkit.scheduler.CraftScheduler$4");
+            tryPreloadClass("org.slf4j.helpers.MessageFormatter");
+            tryPreloadClass("org.slf4j.helpers.FormattingTuple");
+            tryPreloadClass("org.slf4j.helpers.BasicMarker");
+            tryPreloadClass("org.slf4j.helpers.Util");
+            tryPreloadClass("com.destroystokyo.paper.event.player.PlayerConnectionCloseEvent");
+            tryPreloadClass("com.destroystokyo.paper.event.entity.EntityRemoveFromWorldEvent");
+            // Minecraft, seen during saving
+            tryPreloadClass(net.minecraft.world.level.lighting.LayerLightEventListener.DummyLightLayerEventListener.class.getName());
+            tryPreloadClass(net.minecraft.world.level.lighting.LayerLightEventListener.class.getName());
+            tryPreloadClass(net.minecraft.util.ExceptionCollector.class.getName());
+            // Paper end
+        }
+    }
+
+    // Paper start
+    private static void tryPreloadClass(String className) {
+        tryPreloadClass(className, true);
+    }
+    private static void tryPreloadClass(String className, boolean printError) {
+        try {
+            Class.forName(className);
+        } catch (ClassNotFoundException e) {
+            if (printError) System.err.println("An expected class  " + className + " was not found for preloading: " + e.getMessage());
         }
     }
+    // Paper end
 
     private static List<String> asList(String... params) {
         return Arrays.asList(params);
diff --git a/src/main/java/org/bukkit/craftbukkit/util/ServerShutdownThread.java b/src/main/java/org/bukkit/craftbukkit/util/ServerShutdownThread.java
index c6e8441e299f477ddb22c1ce2618710763978f1a..e8e93538dfd71de86515d9405f728db1631e949a 100644
--- a/src/main/java/org/bukkit/craftbukkit/util/ServerShutdownThread.java
+++ b/src/main/java/org/bukkit/craftbukkit/util/ServerShutdownThread.java
@@ -12,11 +12,27 @@ public class ServerShutdownThread extends Thread {
     @Override
     public void run() {
         try {
+            // Paper start - try to shutdown on main
+            server.safeShutdown(false, false);
+            for (int i = 1000; i > 0 && !server.hasStopped(); i -= 100) {
+                Thread.sleep(100);
+            }
+            if (server.hasStopped()) {
+                while (!server.hasFullyShutdown) Thread.sleep(1000);
+                return;
+            }
+            // Looks stalled, close async
             org.spigotmc.AsyncCatcher.enabled = false; // Spigot
+            server.forceTicks = true;
             this.server.close();
+            while (!server.hasFullyShutdown) Thread.sleep(1000);
+        } catch (InterruptedException e) {
+            e.printStackTrace();
+            // Paper end
         } finally {
+            org.apache.logging.log4j.LogManager.shutdown(); // Paper
             try {
-                net.minecrell.terminalconsole.TerminalConsoleAppender.close(); // Paper - Use TerminalConsoleAppender
+                //net.minecrell.terminalconsole.TerminalConsoleAppender.close(); // Paper - Move into stop
             } catch (Exception e) {
             }
         }
diff --git a/src/main/java/org/spigotmc/RestartCommand.java b/src/main/java/org/spigotmc/RestartCommand.java
index 051b9e3a5d29a5840d596468e3ddd013bedc8da3..631457374fda492776f4af0515cee2e43a934d2c 100644
--- a/src/main/java/org/spigotmc/RestartCommand.java
+++ b/src/main/java/org/spigotmc/RestartCommand.java
@@ -138,7 +138,7 @@ public class RestartCommand extends Command
     // Paper end
 
     // Paper start - copied from above and modified to return if the hook registered
-    private static boolean addShutdownHook(String restartScript)
+    public static boolean addShutdownHook(String restartScript)
     {
         String[] split = restartScript.split( " " );
         if ( split.length > 0 && new File( split[0] ).isFile() )
diff --git a/src/main/java/org/spigotmc/WatchdogThread.java b/src/main/java/org/spigotmc/WatchdogThread.java
index 230d55820778e84c1c8aa2b013ae0e5e35568ea1..5ca863aa1859922fa359eba32539229db40e5b98 100644
--- a/src/main/java/org/spigotmc/WatchdogThread.java
+++ b/src/main/java/org/spigotmc/WatchdogThread.java
@@ -11,6 +11,7 @@ import org.bukkit.Bukkit;
 public final class WatchdogThread extends io.papermc.paper.util.TickThread // Paper - rewrite chunk system
 {
 
+    public static final boolean DISABLE_WATCHDOG = Boolean.getBoolean("disable.watchdog"); // Paper
     private static WatchdogThread instance;
     private long timeoutTime;
     private boolean restart;
@@ -39,6 +40,7 @@ public final class WatchdogThread extends io.papermc.paper.util.TickThread // Pa
     {
         if ( WatchdogThread.instance == null )
         {
+            if (timeoutTime <= 0) timeoutTime = 300; // Paper
             WatchdogThread.instance = new WatchdogThread( timeoutTime * 1000L, restart );
             WatchdogThread.instance.start();
         } else
@@ -70,12 +72,13 @@ public final class WatchdogThread extends io.papermc.paper.util.TickThread // Pa
             // Paper start
             Logger log = Bukkit.getServer().getLogger();
             long currentTime = WatchdogThread.monotonicMillis();
-            if ( this.lastTick != 0 && this.timeoutTime > 0 && currentTime > this.lastTick + this.earlyWarningEvery && !Boolean.getBoolean("disable.watchdog")) // Paper - Add property to disable
+            MinecraftServer server = MinecraftServer.getServer();
+            if ( this.lastTick != 0 && this.timeoutTime > 0 && WatchdogThread.hasStarted && (!server.isRunning() || (currentTime > this.lastTick + this.earlyWarningEvery && !DISABLE_WATCHDOG) )) // Paper - add property to disable
             {
-                boolean isLongTimeout = currentTime > lastTick + timeoutTime;
+                boolean isLongTimeout = currentTime > lastTick + timeoutTime || (!server.isRunning() && !server.hasStopped() && currentTime > lastTick + 1000);
                 // Don't spam early warning dumps
                 if ( !isLongTimeout && (earlyWarningEvery <= 0 || !hasStarted || currentTime < lastEarlyWarning + earlyWarningEvery || currentTime < lastTick + earlyWarningDelay)) continue;
-                if ( !isLongTimeout && MinecraftServer.getServer().hasStopped()) continue; // Don't spam early watchdog warnings during shutdown, we'll come back to this...
+                if ( !isLongTimeout && server.hasStopped()) continue; // Don't spam early watchdog warnings during shutdown, we'll come back to this...
                 lastEarlyWarning = currentTime;
                 if (isLongTimeout) {
                 // Paper end
@@ -137,9 +140,24 @@ public final class WatchdogThread extends io.papermc.paper.util.TickThread // Pa
 
                 if ( isLongTimeout )
                 {
-                if ( this.restart && !MinecraftServer.getServer().hasStopped() )
+                if ( !server.hasStopped() )
                 {
-                    RestartCommand.restart();
+                    AsyncCatcher.enabled = false; // Disable async catcher incase it interferes with us
+                    server.forceTicks = true;
+                    if (restart) {
+                        RestartCommand.addShutdownHook( SpigotConfig.restartScript );
+                    }
+                    // try one last chance to safe shutdown on main incase it 'comes back'
+                    server.abnormalExit = true;
+                    server.safeShutdown(false, restart);
+                    try {
+                        Thread.sleep(1000);
+                    } catch (InterruptedException e) {
+                        e.printStackTrace();
+                    }
+                    if (!server.hasStopped()) {
+                        server.close();
+                    }
                 }
                 break;
                 } // Paper end
diff --git a/src/main/resources/log4j2.xml b/src/main/resources/log4j2.xml
index ea4e2161c0bd43884055cc6b8d70b2139f70e720..266b4e6fb3988b5848021c83fdc68e342c70b188 100644
--- a/src/main/resources/log4j2.xml
+++ b/src/main/resources/log4j2.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<Configuration status="WARN" packages="com.mojang.util">
+<Configuration status="WARN" packages="com.mojang.util" shutdownHook="disable">
     <Appenders>
         <Queue name="ServerGuiConsole">
             <PatternLayout pattern="[%d{HH:mm:ss} %level]: %msg%n" />