Removed portal overlap because it was imperfect and one of the cheks was also causing an issue. This was better than fixing because portal regions may overlap with different triggerblocks

Resources/plugin.yml

@@ -1,6 +1,6 @@
 main: com.sekwah.advancedportals.AdvancedPortalsPlugin
 name: AdvancedPortals
-version: 0.0.39
+version: 0.0.40
 author: sekwah41
 description: An advanced portals plugin for bukkit.
 commands:

pom.xml

@@ -16,7 +16,7 @@
             <url>https://hub.spigotmc.org/nexus/content/repositories/snapshots/</url>
         </repository>
     </repositories>
-    <version>0.0.39-snapshot</version>
+    <version>0.0.40-snapshot</version>
     <properties>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
         <maven.compiler.source>1.7</maven.compiler.source>

src/com/sekwah/advancedportals/portals/Portal.java

@@ -179,10 +179,10 @@ public class Portal {
         Location checkpos1 = new Location(pos1.getWorld(), HighX, HighY, HighZ);
         Location checkpos2 = new Location(pos2.getWorld(), LowX, LowY, LowZ);
 
-        if (checkPortalOverlap(checkpos1, checkpos2)) {
+        /*if (checkPortalOverlap(checkpos1, checkpos2)) {
             plugin.getLogger().log(Level.WARNING, "portals must not overlap!");
             return "\u00A7cPortal creation error, portals must not overlap!";
-        }
+        }*/
 
         portalData.getConfig().set(name + ".world", pos1.getWorld().getName());